After Jean and the X-Men defeated scientist Stephen Lang and his robotic Sentinels on his space station, the heroes escaped back to Earth in a shuttle through a lethal solar radiation storm. Dying from radiation poisoning, Jean was saved by the cosmic entity known as the Phoenix Force who created a duplicate body complete with memories and personality, absorbed a portion of her consciousness and cast her into suspended animation in a strange cocoon at the bottom of Jamaica Bay.
Ultimately rejoining the X-Men, Jean and Scott eventually married and were temporarily teleported to a possible future to help raise Nathan Summers. Later, Scott seemingly sacrificed himself to stop Apocalypse from gaining the power of The Twelve. Apocalypse used Scott’s body as a host until his essence was removed from his body by Jean. However, Scott’s corruption by Apocalypse greatly strained his and Jean’s relationship. While on a mission to stop the Stranger from trying to destroy the universe, Jean used the Phoenix Force to get advice from the cosmic being known as Eternity. Later, Jean assumed the position of acting headmistress of the Xavier Institute and was revisited by the Phoenix Force. Following an attack on the X-Men by a mutant impersonating Magneto named Xorn (who had previously been a teacher at the institute), Jean and Wolverine were trapped on a space station that was hurtling into the sun. Seeing no hope for survival and wanting to spare his teammate further suffering, Wolverine seemingly killed Jean, unleashing the Phoenix Consciousness within her and resurrecting her. Returning to Earth, Jean, with the power of the Phoenix, opposed the faux Magneto and was killed by a massive stroke induced by a lethal electromagnetic pulse.